Search Results

Quantifying the clusterness and trajectoriness of single-cell RNA-seq data.

• Authors : Lim, Hong Seo¹ (AUTHOR); Qiu, Peng¹ (AUTHOR)

• Source: PLoS Computational Biology. 2/28/2024, Vol. 20 Issue 2, p1-19. 19p.

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STGIC: A graph and image convolution-based method for spatial transcriptomic clustering.

• Authors : Zhang C; School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China.; Gao J

Subjects: Gene Expression Profiling* ; Transcriptome*/Transcriptome*/Transcriptome*/genetics; Humans

• Source: PLoS computational biology [PLoS Comput Biol] 2024 Feb 28; Vol. 20 (2), pp. e1011935. Date of Electronic Publication: 2024 Feb 28 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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A novel batch-effect correction method for scRNA-seq data based on Adversarial Information Factorization.

• Authors : Monnier L; Paris-Saclay University, CentraleSupélec, Laboratory of Mathematics and Computer Science (MICS), Gif-sur-Yvette, France.; Cournède PH

Subjects: Single-Cell Gene Expression Analysis* ; Single-Cell Analysis*/Single-Cell Analysis*/Single-Cell Analysis*/methods; Humans

• Source: PLoS computational biology [PLoS Comput Biol] 2024 Feb 22; Vol. 20 (2), pp. e1011880. Date of Electronic Publication: 2024 Feb 22 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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SPIN-CGNN: Improved fixed backbone protein design with contact map-based graph construction and contact graph neural network.

• Authors : Zhang X; School of Biology and Biological Engineering, South China University of Technology, Guangzhou, People's Republic of China.; Institute of Systems and Physical Biology, Shenzhen Bay Laboratory, Shenzhen, People's Republic of China.

Subjects: Amino Acids* ; Neural Networks, Computer*; Amino Acid Sequence

• Source: PLoS computational biology [PLoS Comput Biol] 2023 Dec 07; Vol. 19 (12), pp. e1011330. Date of Electronic Publication: 2023 Dec 07 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Attention-based deep clustering method for scRNA-seq cell type identification.

• Authors : Li, Shenghao¹ (AUTHOR); Guo, Hui¹ (AUTHOR); Zhang, Simai² (AUTHOR)

• Source: PLoS Computational Biology. 11/10/2023, Vol. 19 Issue 11, p1-19. 19p.

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Assessing the performance of methods for cell clustering from single-cell DNA sequencing data.

• Authors : Khan R; Department of Computer Science, Florida State University, Tallahassee, Florida, United States of America.; Mallory X

Subjects: Neoplasms*/Neoplasms*/Neoplasms*/genetics; Humans ; Sequence Analysis, DNA

• Source: PLoS computational biology [PLoS Comput Biol] 2023 Oct 12; Vol. 19 (10), pp. e1010480. Date of Electronic Publication: 2023 Oct 12 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Pathfinder: Protein folding pathway prediction based on conformational sampling.

• Authors : Huang Z; College of Information Engineering, Zhejiang University of Technology, Hangzhou, China.; Cui X

Subjects: Algorithms* ; Molecular Biology*; Cluster Analysis

• Source: PLoS computational biology [PLoS Comput Biol] 2023 Sep 11; Vol. 19 (9), pp. e1011438. Date of Electronic Publication: 2023 Sep 11 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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Comparative Clustering (CompaCt) of eukaryote complexomes identifies novel interactions and sheds light on protein complex evolution.

• Authors : van Strien J; Department of Medical BioSciences, Radboud University Medical Center, Nijmegen, the Netherlands.; Evers F

Subjects: Eukaryota* ; Proteins*/Proteins*/Proteins*/metabolism; Animals

• Source: PLoS computational biology [PLoS Comput Biol] 2023 Aug 07; Vol. 19 (8), pp. e1011090. Date of Electronic Publication: 2023 Aug 07 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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SpikeShip: A method for fast, unsupervised discovery of high-dimensional neural spiking patterns.

• Authors : Sotomayor-Gómez B; Donders Centre for Neuroscience, Department of Neurophysics, Radboud University Nijmegen, Nijmegen, Netherlands.; Ernst Strüngmann Institute (ESI) for Neuroscience in Cooperation with Max Planck Society, Frankfurt, Germany.

Subjects: Models, Neurological* ; Neurons*/Neurons*/Neurons*/physiology; Action Potentials/Action Potentials/Action Potentials/physiology

• Source: PLoS computational biology [PLoS Comput Biol] 2023 Jul 31; Vol. 19 (7), pp. e1011335. Date of Electronic Publication: 2023 Jul 31 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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LRT: Integrative analysis of scRNA-seq and scTCR-seq data to investigate clonal differentiation heterogeneity.

• Authors : Xie J; The Interdisciplinary Program in Biostatistics, The Ohio State University, Columbus, Ohio, United States of America.; Jeon H

Subjects: Algorithms* ; Single-Cell Gene Expression Analysis*; Sequence Analysis, RNA

• Source: PLoS computational biology [PLoS Comput Biol] 2023 Jul 10; Vol. 19 (7), pp. e1011300. Date of Electronic Publication: 2023 Jul 10 (Print Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet

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